Yunpeng Xia · 夏云鹏

News

[2025/12] Our paper GerNA-Bind is published in Nature Machine Intelligence!
[2025/10] ODesign — a world model for biomolecular interaction design — is released on arXiv.
[2026/03] EVA — RNA generative design — preprint released.
[2024] Two papers (BLAM6A-Merge & TransC-ac4C) accepted by IEEE/ACM TCBB.
[2023] Won 2nd Prize in the Huawei Cup AI Competition.

AI-Driven Pharmaceutical Research

Core Focus Areas

Small Molecule Binder Design
RNA-targeted small molecule screening
Structure-based drug design

Technology Applications

Early disease detection systems
Intelligent drug delivery
Personalized medicine

"Bridging geometric deep learning with therapeutic discovery"

Publications

A Long-Context Generative Foundation Model Deciphers RNA Design Principles

Yanjie Huang, Guangye Lv, Anyue Cheng, Wei Xie, Mengyan Chen, Xinyi Ma, Yijun Huang, Yueyang Tang, Qingya Shi, Jiahao Wang, Zining Wang, Junxiong Wang, Yunpeng Xia, Lulu Zhao, Yifan Cai, Jack X. Chen, Shuangjia Zheng

Updated via Semantic Scholar bioRxiv, March 2026 · Cited 1 times

Paper Code

Deciphering RNA-ligand Binding Specificity with GerNA-Bind

Yunpeng Xia, Jiayi Li, Yi-Ting Chu, Jiahua Rao, Jing Chen, Chenqing Hua, Dong-Jun Yu, Xiu-Cai Chen, Shuangjia Zheng

Updated via Semantic Scholar Nature Machine Intelligence, December 2025 · Cited 1 times

Paper Code Preprint

Deciphering RNA-ligand Binding Specificity with GerNA-Bind

Yunpeng Xia, Jiayi Li, Yi-Ting Chu, Jiahua Rao, Jing Chen, Chenqing Hua, Dong-Jun Yu, Xiu-Cai Chen, Shuangjia Zheng

Updated via Semantic Scholar Nature Machine Intelligence, December 2025 · Cited 3 times

Paper Code Preprint

BLAM6A-Merge: Leveraging Attention Mechanisms and Feature Fusion Strategies to Improve the Identification of RNA N6-Methyladenosine Sites

Yunpeng Xia, Ying Zhang, Dian Liu, Yi-Heng Zhu, Zhikang Wang, Jiangning Song, Dong-Jun Yu

Updated via Semantic Scholar IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2024 · Cited 3 times

Paper Code

TransC-ac4C: Identification of N4-Acetylcytidine (ac4C) Sites in mRNA Using Deep Learning

Dian Liu, Zi Liu, Yunpeng Xia, Zhikang Wang, Jiangning Song, Dong-Jun Yu

Updated via Semantic Scholar IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2024 · Cited 3 times

Paper

Contact

xiayp99@gmail.com GitHub Google Scholar

Yunpeng Xia 「夏云鹏」

News

AI-Driven Pharmaceutical Research

Core Focus Areas

Technology Applications

Publications

A Long-Context Generative Foundation Model Deciphers RNA Design Principles

Deciphering RNA-ligand Binding Specificity with GerNA-Bind

Deciphering RNA-ligand Binding Specificity with GerNA-Bind

BLAM6A-Merge: Leveraging Attention Mechanisms and Feature Fusion Strategies to Improve the Identification of RNA N6-Methyladenosine Sites

TransC-ac4C: Identification of N4-Acetylcytidine (ac4C) Sites in mRNA Using Deep Learning

Contact